MS-Fit Search Results


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Sample ID (comment): B10
Database searched: SwissProt.9.30.2001
Molecular weight search (1000 - 100000 Da) selects 94637 entries.
Full pI range: 100225 entries.
Species search ( HUMAN MOUSE ) selects 11762 entries.
Combined molecular weight, pI and species searches select 10474 entries.
Pre searches select 10474 entries.
MS-Fit search selects 1292 entries (results displayed for top 10 matches).

Parameters Used in Search

Considered modifications: | Oxidation of M | Protein N-terminus Acetylated |
Min. # Peptides
to Match
Peptide Mass
Tolerance (+/-)
Peptide Masses
are
Digest
Used
Max. # Missed
Cleavages
Cysteines
Modified by
Peptide
N terminus
Peptide
C terminus
4 100.000 ppm monoisotopic Trypsin 3 acrylamide Hydrogen (H) Free Acid (O H)

Result Summary

RankMOWSE
Score
# (%)
Masses
Matched
Protein
MW (Da)/pI
SpeciesAccession #Protein Name
16.25e+00612/43 (27%) 49229.9 / 5.89HUMANHETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN H (HNRNP H)
23.93e+00410/43 (23%) 49264.0 / 5.89HUMANHETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN H' (HNRNP H') (FTP-3)
37.11e+0038/43 (18%) 66018.2 / 8.16HUMANKERATIN, TYPE II CYTOSKELETAL 1 (CYTOKERATIN 1) (K1) (CK 1) (67 KDA CYTOKERATIN) (HAIR ALPHA PROTEIN)
43.96e+00310/43 (23%) 55993.5 / 8.76HUMANSERINE HYDROXYMETHYLTRANSFERASE, MITOCHONDRIAL PRECURSOR (SERINE METHYLASE) (GLYCINE HYDROXYMETHYLTRANSFERASE) (SHMT)
57924/43 (9%) 10992.2 / 9.30HUMANSMALL INDUCIBLE CYTOKINE A1 PRECURSOR (T LYMPHOCYTE-SECRETED PROTEIN I-309)
66089/43 (20%) 47244.7 / 9.52HUMANFORKHEAD BOX PROTEIN P3 (ZINC FINGER PROTEIN JM2) (SCURFIN)
758212/43 (27%) 48539.1 / 8.66MOUSECARNITINE DEFICIENCY-ASSOCIATED PROTEIN EXPRESSED IN VENTRICLE 1 (CDV-1 PROTEIN)
852210/43 (23%) 94506.3 / 5.65HUMANOSMOTIC STRESS PROTEIN 94 (HEAT SHOCK 70-RELATED PROTEIN APG-1)
94889/43 (20%) 47756.9 / 9.78MOUSELUPUS LA PROTEIN HOMOLOG (LA RIBONUCLEOPROTEIN) (LA AUTOANTIGEN HOMOLOG)
1036310/43 (23%) 89614.9 / 8.61HUMANTUMOR NECROSIS FACTOR, ALPHA-INDUCED PROTEIN 3 (PUTATIVE DNA BINDING PROTEIN A20) (ZINC FINGER PROTEIN A20)

Detailed Results

1. 12/43 matches (27%). 49229.9 Da, pI = 5.89. Acc. # P31943. HUMAN. HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN H (HNRNP H).
m/z
submitted
MH+
matched
Delta
ppm
startendPeptide Sequence
(Click for Fragment Ions)
Modifications
1518.76251518.701140.4157 17 29(R)(F)
1615.72631615.663338.9555 263 275(R)(Y)
1631.74341631.658352.1999 263 275(R)DLNYCFSGMSDHR(Y)1Met-ox
1684.80911684.767924.4065 99 114(K)(L)
1841.95191841.892132.4432 151 167(R)(A)
1997.06721996.976945.2410 300 316(R)(V)
2001.05402001.027513.2410 200 217(R)(G)
2107.06732106.983139.9367 50 68(R)(L)
2112.06252111.902775.6416 276 294(R)(G)
2142.15612142.025660.9288 356 375(R)(Y)
2660.23182660.3783-55.0767 50 73(R)(D)
2717.23442717.045369.5931 234 259(R)(F)

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The matched peptides cover 40% (183/449AA's) of the protein.
Coverage Map for This Hit (MS-Digest index #):

Percent TIC = 27.9 Mean Error = 36.4939 ppm Data Tolerance = 67.8770 ppm Mean Missed Cleavages = 0.3

2. 10/43 matches (23%). 49264.0 Da, pI = 5.89. Acc. # P55795. HUMAN. HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN H' (HNRNP H') (FTP-3).
m/z
submitted
MH+
matched
Delta
ppm
startendPeptide Sequence
(Click for Fragment Ions)
Modifications
1307.73491307.630679.7982 88 98(K)(H)
1615.72631615.7824-34.7283 1 14(-)MMLSTEGREGFVVK(V)2Met-ox
1615.72631615.663338.9555 263 275(R)(Y)
1631.74341631.658352.1999 263 275(R)DLNYCFSGMSDHR(Y)1Met-ox
1684.80911684.767924.4065 99 114(K)(L)
1841.95191841.892132.4432 151 167(R)(A)
2001.05402001.027513.2410 200 217(R)(G)
2029.08062028.948964.8969 300 316(R)(V)
2044.98042044.943917.8611 300 316(R)ATENDIYNFFSPLNPMR(V)1Met-ox
2121.11162120.998853.1867 50 68(R)(L)
2660.23182660.023878.1750 234 259(R)(F)

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Click individual mass to do a non-specific cleavage search.

The matched peptides cover 33% (151/449AA's) of the protein.
Coverage Map for This Hit (MS-Digest index #):

Percent TIC = 23.3 Mean Error = 38.2214 ppm Data Tolerance = 66.4556 ppm Mean Missed Cleavages = 0.2

3. 8/43 matches (18%). 66018.2 Da, pI = 8.16. Acc. # P04264. HUMAN. KERATIN, TYPE II CYTOSKELETAL 1 (CYTOKERATIN 1) (K1) (CK 1) (67 KDA CYTOKERATIN) (HAIR ALPHA PROTEIN).
m/z
submitted
MH+
matched
Delta
ppm
startendPeptide Sequence
(Click for Fragment Ions)
Modifications
704.3287704.3830-77.2069 252 257(R)(N)
1179.61421179.601011.2005 377 386(K)(H)
1277.77531277.710550.6779 473 483(K)(T)
1475.79471475.78586.0005 200 211(R)(W)
1475.79471475.749430.6562 212 223(K)(T)
1716.92431716.851742.2871 418 432(K)(G)
1994.09351993.977258.3356 224 239(R)(R)
2121.11162121.011447.2596 9 29(R)(R)
2384.07752383.952452.4763 519 549(R)(G)

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Click individual mass to do a non-specific cleavage search.

The matched peptides cover 20% (134/644AA's) of the protein.
Coverage Map for This Hit (MS-Digest index #):

Percent TIC = 18.6 Mean Error = 24.6319 ppm Data Tolerance = 84.7004 ppm Mean Missed Cleavages = 0.1

4. 10/43 matches (23%). 55993.5 Da, pI = 8.76. Acc. # P34897. HUMAN. SERINE HYDROXYMETHYLTRANSFERASE, MITOCHONDRIAL PRECURSOR (SERINE METHYLASE) (GLYCINE HYDROXYMETHYLTRANSFERASE) (SHMT).
m/z
submitted
MH+
matched
Delta
ppm
startendPeptide Sequence
(Click for Fragment Ions)
Modifications
1135.63321135.6475-12.6308 220 230(R)(L)
1169.56671169.547916.0765 306 314(R)(I)
1179.61421179.550254.2455 237 245(R)(A)
1509.77151509.737222.7590 70 82(R)(A)
1509.77151509.8654-62.1859 281 293(K)(K)
1548.88051548.838627.0645 201 214(K)(L)
1878.05561878.031013.1142 270 286(K)(S)
1994.09351993.998347.7385 298 314(K)(I)
2001.05402001.1133-29.6464 197 214(K)(L)
2001.05402000.993830.0829 341 356(K)QACTPMFREYSLQVLK(N)1Met-ox
2001.05402001.04395.0346 399 416(R)(S)
2028.07612027.974849.9341 105 121(R)(R)
2112.06252112.1777-54.5465 390 409(K)(N)

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Click individual mass to do a non-specific cleavage search.

The matched peptides cover 30% (152/504AA's) of the protein.
Coverage Map for This Hit (MS-Digest index #):

Percent TIC = 23.3 Mean Error = 8.2339 ppm Data Tolerance = 75.9949 ppm Mean Missed Cleavages = 0.9

5. 4/43 matches (9%). 10992.2 Da, pI = 9.30. Acc. # P22362. HUMAN. SMALL INDUCIBLE CYTOKINE A1 PRECURSOR (T LYMPHOCYTE-SECRETED PROTEIN I-309).
m/z
submitted
MH+
matched
Delta
ppm
startendPeptide Sequence
(Click for Fragment Ions)
Modifications
1518.76251518.737516.4570 71 83(K)(H)
1684.80911684.782715.6294 33 45(R)(A)
1997.06721997.013926.6769 69 85(R)(K)
2718.20302718.3920-69.5385 1 24(-)(S)

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Click individual mass to do a non-specific cleavage search.

The matched peptides cover 56% (54/96AA's) of the protein.
Coverage Map for This Hit (MS-Digest index #):

Percent TIC = 9.3 Mean Error = -2.6938 ppm Data Tolerance = 89.6910 ppm Mean Missed Cleavages = 0.5

6. 9/43 matches (20%). 47244.7 Da, pI = 9.52. Acc. # Q9BZS1. HUMAN. FORKHEAD BOX PROTEIN P3 (ZINC FINGER PROTEIN JM2) (SCURFIN).
m/z
submitted
MH+
matched
Delta
ppm
startendPeptide Sequence
(Click for Fragment Ions)
Modifications
1169.56671169.6642-83.4127 28 39(R)(G)
1307.73491307.697328.7770 376 386(R)(H)
1863.99561863.969214.1674 333 347(K)(W)
1994.09351993.987153.3724 398 414(R)(K)
1997.06721997.039114.0819 387 402(R)(G)
2019.04262019.1140-35.3484 145 163(K)(E)
2027.02612027.0786-25.9420 28 48(R)(D)
2107.06732107.0812-6.6203 370 386(R)(H)
2563.39982563.282145.8938 357 375(K)(N)

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Click individual mass to do a non-specific cleavage search.

The matched peptides cover 26% (113/431AA's) of the protein.
Coverage Map for This Hit (MS-Digest index #):

Percent TIC = 20.9 Mean Error = 0.5521 ppm Data Tolerance = 86.9001 ppm Mean Missed Cleavages = 1.2

7. 12/43 matches (27%). 48539.1 Da, pI = 8.66. Acc. # O35594. MOUSE. CARNITINE DEFICIENCY-ASSOCIATED PROTEIN EXPRESSED IN VENTRICLE 1 (CDV-1 PROTEIN).
m/z
submitted
MH+
matched
Delta
ppm
startendPeptide Sequence
(Click for Fragment Ions)
Modifications
1179.61421179.539063.7696 379 387(R)(K)
1307.73491307.633977.2202 379 388(R)(Q)
1509.77151509.740520.5263 218 230(K)(L)
1548.88051548.805648.3813 206 219(R)(T)
1631.74341631.7553-7.2819 192 205(K)(V)
1684.80911684.749735.2259 376 387(K)MWRDLEQLMECK(K)2Met-ox
1780.95911780.854858.5163 376 388(K)(Q)
1997.06721997.031218.0191 68 83(K)KMMRNEPIEGKLSLYR(Q)2Met-ox
2028.07612028.1395-31.2468 152 168(K)(T)
2121.11162121.006949.3774 251 266(R)(K)
2142.15612142.025061.2332 318 335(R)(K)
2717.23442717.3681-49.2047 388 411(K)(L)

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Click individual mass to do a non-specific cleavage search.

The matched peptides cover 34% (142/414AA's) of the protein.
Coverage Map for This Hit (MS-Digest index #):

Percent TIC = 27.9 Mean Error = 28.7113 ppm Data Tolerance = 79.8347 ppm Mean Missed Cleavages = 1.7

8. 10/43 matches (23%). 94506.3 Da, pI = 5.65. Acc. # O95757. HUMAN. OSMOTIC STRESS PROTEIN 94 (HEAT SHOCK 70-RELATED PROTEIN APG-1).
m/z
submitted
MH+
matched
Delta
ppm
startendPeptide Sequence
(Click for Fragment Ions)
Modifications
1135.63321135.585541.9717 607 615(K)(E)
1307.73491307.695929.7998 186 196(K)(N)
1475.79471475.734240.9946 361 374(K)(G)
1841.95191842.0350-45.1131 54 69(K)(L)
2001.05402001.0955-20.7722 85 102(R)(V)
2027.02612026.972226.5838 459 477(R)(V)
2112.06252112.0986-17.0914 1 19(-)(S)
2112.06252111.967644.9056 740 757(K)(L)
2121.11162121.1490-17.6514 709 725(K)IQLVMKVIEAYRNKDER(Y)1Met-ox
2144.10412143.957568.3857 740 757(K)CISDAMSWLNSKMNAQNK(L)2Met-ox
2164.19612164.154819.0402 258 274(K)(K)
2164.19612164.032075.8299 684 700(K)(A)

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Click individual mass to do a non-specific cleavage search.

The matched peptides cover 20% (175/839AA's) of the protein.
Coverage Map for This Hit (MS-Digest index #):

Percent TIC = 23.3 Mean Error = 20.5736 ppm Data Tolerance = 75.8798 ppm Mean Missed Cleavages = 1.2

9. 9/43 matches (20%). 47756.9 Da, pI = 9.78. Acc. # P32067. MOUSE. LUPUS LA PROTEIN HOMOLOG (LA RIBONUCLEOPROTEIN) (LA AUTOANTIGEN HOMOLOG).
m/z
submitted
MH+
matched
Delta
ppm
startendPeptide Sequence
(Click for Fragment Ions)
Modifications
1548.88051548.863710.8250 61 74(R)(S)
1878.05561877.875595.8886 370 384(R)(R)
2028.07612028.06405.9581 330 349(K)(R)
2029.08062029.06806.2196 38 54(K)(F)
2044.98042045.0629-40.3546 38 54(K)EQIKLDEGWVPLETMIK(F)1Met-ox
2107.06732107.1704-48.9479 260 277(K)(A)
2121.11162121.1272-7.3670 175 191(K)(K)
2660.23182660.4373-77.2655 33 54(R)(F)
2717.23442717.3550-44.3900 17 37(K)(E)

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Click individual mass to do a non-specific cleavage search.

The matched peptides cover 29% (122/415AA's) of the protein.
Coverage Map for This Hit (MS-Digest index #):

Percent TIC = 20.9 Mean Error = -11.0482 ppm Data Tolerance = 100.7634 ppm Mean Missed Cleavages = 2.0

10. 10/43 matches (23%). 89614.9 Da, pI = 8.61. Acc. # P21580. HUMAN. TUMOR NECROSIS FACTOR, ALPHA-INDUCED PROTEIN 3 (PUTATIVE DNA BINDING PROTEIN A20) (ZINC FINGER PROTEIN A20).
m/z
submitted
MH+
matched
Delta
ppm
startendPeptide Sequence
(Click for Fragment Ions)
Modifications
1135.63321135.586041.5587 279 287(R)(V)
1179.61421179.558147.5795 677 685(K)(F)
1475.79471475.684174.9607 288 299(K)VHFLTDPENEMK(E)1Met-ox
1509.77151509.8277-37.2025 124 136(R)(N)
1518.76251518.719728.1503 531 542(R)(T)
1716.92431716.826756.8315 288 301(K)(L)
1863.99561863.946126.5707 1 16(-)(K)
1994.09351994.050021.8394 25 41(R)(T)
2027.02612026.988118.7189 743 761(R)(C)
2704.21602704.3378-45.0447 677 697(K)(S)

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Click individual mass to do a non-specific cleavage search.

The matched peptides cover 15% (121/790AA's) of the protein.
Coverage Map for This Hit (MS-Digest index #):

Percent TIC = 23.3 Mean Error = 23.3962 ppm Data Tolerance = 76.3177 ppm Mean Missed Cleavages = 1.1


MS-Fit 3.3.1, ProteinProspector 3.4.1
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