MS-Fit Search Results



.

Parameters

Database searched: SwissProt.10.25.2002
Digest Used: Trypsin
Max. # Missed Cleavages: 1
Peptide N terminus: Hydrogen
Peptide C terminus: Free Acid
Cysteine Modification: acrylamide
Instrument Name: MALDI-TOF
Sample ID (comment): B32
Minimum Matches: 4
Sort Type: Score Sort
Considered modifications: | Peptide N-terminal Gln to pyroGlu | Oxidation of M | Protein N-terminus Acetylated |
Min Parent Ion Matches: 1
MOWSE On: 1
MOWSE P Factor: 0.4

Pre Search Results

Number of entries in the database: 116819
Molecular weight search (1000 - 150000 Da) selects 114669 entries.
Full pI range: 116819 entries.
Species search ( HUMAN MOUSE ) selects 14257 entries.
Combined molecular weight, pI and species searches select 13650 entries.
Pre searches select 13650 entries.

Data Set 1 Results

MS-Fit search selects 4070 entries (results displayed for top 10 matches).

Results Summary

MOWSE
Score
#/94(%)
Masses
Matched
%
Cov
%
TIC
Mean
Err
ppm
Data
Tol
ppm
MS-Digest Index #Protein MW (Da)/pIAccession #SpeciesProtein Name
17.912e+01326 (27)25.027.730.933.8 117791/5.6HUMANUbiquitin-activating enzyme E1 (A1S9 protein)
25.689e+00818 (19)17.019.129.336.7 117810/5.4MOUSEUbiquitin-activating enzyme E1 1
31.384e+00718 (19)31.019.125.344.9 53675/5.5HUMANKeratin, type II cytoskeletal 8 (Cytokeratin 8) (K8) (CK 8)
46.325e+00613 (13)25.013.835.444.9 50986/6.3MOUSEUbiquitin-activating enzyme E1 X
55.703e+00514 (14)17.014.914.771.6 119389/6.2HUMANHuntingtin interacting protein 1 related (Hip1-related) (Hip 12)
64.964e+00514 (14)19.014.920.658.0 92890/5.3HUMANDNA replication licensing factor MCM6 (P105MCM)
71.787e+00511 (11)18.011.712.381.3 71370/8.6HUMANPlasma kallikrein precursor (Plasma prekallikrein) (Kininogenin) (Fletcher factor)
86.843e+00414 (14)17.014.917.159.0 74210/6.5MOUSELamin A
96.290e+00411 (11)23.011.716.039.8 48058/5.3HUMANKeratin, type I cytoskeletal 18 (Cytokeratin 18) (K18) (CK 18)
105.167e+00411 (11)9.011.713.988.1 122140/8.1HUMANDNA-directed RNA polymerase I 135 kDa polypeptide (RNA polymerase I subunit 2) (RPA135)
13892..x...xxx.......x..........x............x............xx.x..x.....x...xxx.x....xx.x..x.xxxxx.x.
89732..x...xxx.......x.......................x............x..x..x.....x....xx.x....xx....x..x....x.
28336.....................x.x..x..x...xx...x...x.x.x........x......xx...x..x..x...x.....x..........
87103......xxx.......x....................................x..x..x.....x..x.........xx....x..x......
10131.....x.xx.........x......................xx..x.....x.....................xx..........x...x..xx
37857..x.............x..x.x.............x.......x.....x.x.....x..x.....x.......x.....x..x..........
21973...x.x...x...........................xx........x..................x...xx.x...........x........
14532...x.........x.............x..x........xxx..........x..........xx.x......x.x.x................
50879..........x...x.............x......x.........x.......x...x...x........x.........x.......x.....
58850.....x....x.........................x....x.............x....xx....x.x............xx...........



Detailed Results

1. 26/94 matches (27%).
Acc. #: Species: HUMAN Name: Ubiquitin-activating enzyme E1 (A1S9 protein)
Index: MW: 117791 Da pI: 5.6
m/z
Submitted
MH+
Matched
Delta
ppm
ModificationsStartEndMissed
Cleavages
Database
Sequence
930.4789930.4620185875921(R) (K)
943.4698943.456514pyroGlu 9749800(K)QFLDYFK(T)
945.5407945.5443-3.86286350(K) (N)
960.4929960.4750191201271(R) (A)
960.4929960.4831109749800(K) (T)
984.5143984.4678476506570(R) (Q)
1032.51391032.4685441751820(R) (G)
1102.61031102.6220-115275371(K) (Q)
1250.62511250.5653488708800(R) (H)
1259.78031259.73233870810(R) (G)
1288.71601288.657146101110210(R) (V)
1288.71601288.67243458680(R) (R)
1304.69501304.6520331Met-ox 101110210(R)LDQPMTEIVSR(V)
1304.69501304.6673211Met-ox 58680(R)QLYVLGHEAMK(R)
1370.78941370.7684158318431(K) (M)
1415.84901415.83341169811(K) (G)
1419.79811419.742539pyroGlu 5165260(R)QFLFRPWDVTK(L)
1436.81881436.7690355165260(R) (L)
1459.73981459.6851372272390(K) (H)
1573.85591573.800835100910211(K) (V)
1623.96271623.9070346796930(R) (S)
1655.84531655.7917324514650(R) (L)
1696.92061696.8560386366490(K) (D)
1809.01791808.9507373693840(R) (K)
1838.95191838.8251699459570(R) (F)
1884.02341883.9463413513680(R) (A)
1909.04221908.9959243053220(K) (F)
1937.14531937.0456513693851(R) (L)
2369.20162369.1124382692880(K) (G)

Click link below to search for cysteine linked fragments.

Click link below to do a non-specific cleavage search.

Click link below to search for another component.

The matched peptides cover 25% (271/1058AA's) of the protein.
Coverage Map for This Hit (MS-Digest index #):

2. 18/94 matches (19%).
Acc. #: Species: MOUSE Name: Ubiquitin-activating enzyme E1 1
Index: MW: 117810 Da pI: 5.4
m/z
Submitted
MH+
Matched
Delta
ppm
ModificationsStartEndMissed
Cleavages
Database
Sequence
930.4789930.4620185875921(R) (K)
943.4698943.456514pyroGlu 9749800(K)QFLDYFK(T)
945.5407945.5443-3.86286350(K) (N)
960.4929960.4750191201271(R) (A)
960.4929960.4831109749800(K) (T)
984.5143984.4678476506570(R) (Q)
1102.61031102.6220-115275371(K) (Q)
1250.62511250.5653488708800(R) (H)
1288.71601288.657146101110210(R) (V)
1288.71601288.67243458680(R) (M)
1304.69501304.6520331Met-ox 101110210(R)LDQPMTEIVSR(V)
1304.69501304.6673211Met-ox 58680(R)QLYVLGHEAMK(M)
1370.78941370.7684158318431(K) (M)
1419.79811419.742539pyroGlu 5165260(R)QFLFRPWDVTK(L)
1436.81881436.7690355165260(R) (L)
1459.73981459.6851372272390(K) (H)
1573.85591573.800835100910211(K) (V)
1623.96271623.9070346796930(R) (S)
1696.92061696.8560386366490(K) (D)
1838.95191838.8251699459570(R) (F)
2369.20162369.1124382692880(K) (G)

Click link below to search for cysteine linked fragments.

Click link below to do a non-specific cleavage search.

Click link below to search for another component.

The matched peptides cover 17% (182/1058AA's) of the protein.
Coverage Map for This Hit (MS-Digest index #):

3. 18/94 matches (19%).
Acc. #: Species: HUMAN Name: Keratin, type II cytoskeletal 8 (Cytokeratin 8) (K8) (CK 8)
Index: MW: 53675 Da pI: 5.5
m/z
Submitted
MH+
Matched
Delta
ppm
ModificationsStartEndMissed
Cleavages
Database
Sequence
1000.53111000.499831pyroGlu 3653721(K)QDMARQLR(E)
1000.53111000.5679-373173250(R) (G)
1016.51491016.494720pyroGlu 1Met-ox 3653721(K)QDMARQLR(E)
1030.57021030.56861.61231300(K) (T)
1045.55781045.55304.71501580(R) (L)
1060.57501060.5639113934011(R) (L)
1062.54971062.510837pyroGlu 2262330(R)QLYEEEIR(E)
1079.56651079.5122502652730(K) (S)
1079.56651079.5373272262330(R) (E)
1129.66081129.6217353423521(R) (L)
1129.66081129.6217353533620(K) (A)
1137.62831137.5792432862950(K) (H)
1153.64051153.5563733733810(R) (L)
1277.75471277.7105353823920(K) (K)
1341.76481341.7490123173281(R) (A)
1344.72641344.6759373293410(R) (G)
1405.82081405.8055113823931(K) (L)
1419.79811419.7484352142250(R) (Q)
1459.73981459.69303219321(R) (I)
1566.79811566.79502.01Met-ox 3703811(R)QLREYQELMNVK(L)
1685.91851685.8571363263411(K) (G)

Click link below to search for cysteine linked fragments.

Click link below to do a non-specific cleavage search.

Click link below to search for another component.

The matched peptides cover 31% (153/483AA's) of the protein.
Coverage Map for This Hit (MS-Digest index #):

4. 13/94 matches (13%).
Acc. #: Species: MOUSE Name: Ubiquitin-activating enzyme E1 X
Index: MW: 50986 Da pI: 6.3
m/z
Submitted
MH+
Matched
Delta
ppm
ModificationsStartEndMissed
Cleavages
Database
Sequence
943.4698943.456514pyroGlu 3603660(K)QFLDYFK(T)
945.5407945.5443-3.814210(K) (N)
960.4929960.4831103603660(K) (T)
984.5143984.46784736430(R) (Q)
1250.62511250.5653482562660(R) (H)
1288.71601288.6571463974070(R) (V)
1304.69501304.6520331Met-ox 3974070(R)LDQPMTEIVSR(V)
1370.78941370.7684152172291(K) (M)
1408.72151408.6176741Met-ox 4194290(R)HWCLSCAATMK(A)
1573.85591573.8008353954071(K) (V)
1623.96271623.90703465790(R) (S)
1696.92061696.85603822350(K) (D)
1838.95191838.8251693313430(R) (F)

Click link below to search for cysteine linked fragments.

Click link below to do a non-specific cleavage search.

Click link below to search for another component.

The matched peptides cover 25% (113/450AA's) of the protein.
Coverage Map for This Hit (MS-Digest index #):

5. 14/94 matches (14%).
Acc. #: Species: HUMAN Name: Huntingtin interacting protein 1 related (Hip1-related) (Hip 12)
Index: MW: 119389 Da pI: 6.2
m/z
Submitted
MH+
Matched
Delta
ppm
ModificationsStartEndMissed
Cleavages
Database
Sequence
941.4645941.4991-377477540(R) (T)
945.5407945.5257163533600(R) (R)
960.4929960.5366-455115181(K) (R)
994.5477994.495852pyroGlu 105010571(R)QDHQLDKK(D)
1104.60861104.5788275025101(R) (S)
1129.66081129.6152401101(-) (V)
1139.58711139.6213-302822910(R) (A)
1184.65441184.6315191261350(R) (L)
1459.73981459.7869-329419541(R) (S)
1471.77541471.7195382512611(R) (N)
1471.77541471.7756-0.156266410(R) (L)
1713.94791713.8958307327460(R) (H)
1909.04221908.9707371471630(K) (A)
2369.20162369.1295309559751(K) (L)
2683.52682683.3296741892121(K) (L)

Click link below to search for cysteine linked fragments.

Click link below to do a non-specific cleavage search.

Click link below to search for another component.

The matched peptides cover 17% (189/1068AA's) of the protein.
Coverage Map for This Hit (MS-Digest index #):

6. 14/94 matches (14%).
Acc. #: Species: HUMAN Name: DNA replication licensing factor MCM6 (P105MCM)
Index: MW: 92890 Da pI: 5.3
m/z
Submitted
MH+
Matched
Delta
ppm
ModificationsStartEndMissed
Cleavages
Database
Sequence
930.4789930.464515pyroGlu 6036111(R)QRDGSGVTK(S)
984.5143984.49771786920(R) (A)
995.5517995.5750-235515581(R) (I)
1000.53111000.4852464084150(K) (A)
1000.53111000.5111201821891(R) (R)
1000.53111000.5904-594874961(K) (T)
1065.56301065.5151451741810(K) (N)
1136.62651136.6064185665741(R) (Y)
1177.77121177.7421257237320(R) (K)
1184.65441184.6275232082170(R) (G)
1292.71961292.6309693273361(K) (V)
1307.72421307.711210.07457541(K) (E)
1381.70501381.6599332702820(R) (G)
1471.77541471.7222361091200(K) (H)
1629.93471629.89642346580(K) (N)
1685.91851685.8611344975120(R) (S)

Click link below to search for cysteine linked fragments.

Click link below to do a non-specific cleavage search.

Click link below to search for another component.

The matched peptides cover 19% (161/821AA's) of the protein.
Coverage Map for This Hit (MS-Digest index #):

7. 11/94 matches (11%).
Acc. #: Species: HUMAN Name: Plasma kallikrein precursor (Plasma prekallikrein) (Kininogenin) (Fletcher factor)
Index: MW: 71370 Da pI: 8.6
m/z
Submitted
MH+
Matched
Delta
ppm
ModificationsStartEndMissed
Cleavages
Database
Sequence
935.4659935.4838-194604670(K) (E)
941.4645941.5031-4174801(K) (D)
963.4735963.4570173513590(R) (I)
1077.50721077.5693-586056131(R) (V)
1079.56651079.5043581311390(K) (R)
1157.62601157.6319-5.14684760(K) (V)
1381.70501381.6217601031130(K) (D)
1419.79811419.7055655926040(R) (R)
1436.81881436.8001134474590(R) (D)
1459.73981459.7181153603730(R) (L)
1713.94791713.8958305385511(K) (Y)

Click link below to search for cysteine linked fragments.

Click link below to do a non-specific cleavage search.

Click link below to search for another component.

The matched peptides cover 18% (116/638AA's) of the protein.
Coverage Map for This Hit (MS-Digest index #):

8. 14/94 matches (14%).
Acc. #: Species: MOUSE Name: Lamin A
Index: MW: 74210 Da pI: 6.5
m/z
Submitted
MH+
Matched
Delta
ppm
ModificationsStartEndMissed
Cleavages
Database
Sequence
935.4659935.4798-154204271(R) (S)
972.5514972.5114413893970(R) (S)
1032.51391032.5148-0.841821890(K) (R)
1048.54361048.5097321Met-ox 1821890(K)QLQDEMLR(R)
1089.59151089.55403451600(R) (L)
1102.61031102.5744333783861(R) (L)
1104.60861104.6530-4042501(R) (S)
1187.68861187.6384423203291(K) (E)
1344.72641344.72362.149601(R) (L)
1350.71151350.6225665165270(K) (T)
1381.70501381.69636.22092191(K) (R)
1459.73981459.7731-233673781(K) (L)
1475.81501475.7681321Met-ox 3673781(K)LALDMEIHAYRK(L)
1566.79811566.7512306296450(R) (S)

Click link below to search for cysteine linked fragments.

Click link below to do a non-specific cleavage search.

Click link below to search for another component.

The matched peptides cover 17% (114/665AA's) of the protein.
Coverage Map for This Hit (MS-Digest index #):

9. 11/94 matches (11%).
Acc. #: Species: HUMAN Name: Keratin, type I cytoskeletal 18 (Cytokeratin 18) (K18) (CK 18)
Index: MW: 48058 Da pI: 5.3
m/z
Submitted
MH+
Matched
Delta
ppm
ModificationsStartEndMissed
Cleavages
Database
Sequence
965.4916965.4692232542610(R) (K)
975.4882975.4536357140(R) (S)
1041.62291041.6057171501580(R) (L)
1065.56301065.55804.63733810(K) (R)
1139.58711139.6173-2646551(R) (G)
1250.62511250.61299.7pyroGlu 1761860(R)QSVENDIHGLR(K)
1292.71961292.7214-1.43713811(K) (R)
1319.72461319.6708411381490(R) (I)
1419.79811419.7484353593700(R) (V)
1629.93471629.885230pyroGlu 3593721(R)QAQEYEALLNIKVK(L)
1884.02341884.00788.32232410(K) (S)

Click link below to search for cysteine linked fragments.

Click link below to do a non-specific cleavage search.

Click link below to search for another component.

The matched peptides cover 23% (100/430AA's) of the protein.
Coverage Map for This Hit (MS-Digest index #):

10. 11/94 matches (11%).
Acc. #: Species: HUMAN Name: DNA-directed RNA polymerase I 135 kDa polypeptide (RNA polymerase I subunit 2) (RPA135)
Index: MW: 122140 Da pI: 8.1
m/z
Submitted
MH+
Matched
Delta
ppm
ModificationsStartEndMissed
Cleavages
Database
Sequence
941.4645941.5169-569659730(R) (N)
965.4916965.48457.47117190(R) (S)
965.4916965.5025-111Met-ox 8108161(K)CVRITMR(V)
1067.60441067.5261737207280(K) (I)
1104.60861104.5359667897970(K) (V)
1277.75471277.696845pyroGlu 76860(K)QFLGYVPIMVK(S)
1307.72421307.8163-705635740(R) (E)
1319.72461319.6629477877971(K) (V)
1381.70501381.6893118688800(R) (S)
1408.72151408.6791302Met-ox 2872961(K)FYMLCLMTRK(L)
1655.84531655.83933.6pyroGlu 7317460(K)QGDSSLVFGIKPGDPR(V)
1672.89961672.8659207317460(K) (V)

Click link below to search for cysteine linked fragments.

Click link below to do a non-specific cleavage search.

Click link below to search for another component.

The matched peptides cover 9% (107/1079AA's) of the protein.
Coverage Map for This Hit (MS-Digest index #):


MS-Fit in ProteinProspector 4.0.4
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