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NiceProt View of Swiss-Prot: O14579

[General] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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General information about the entry
Entry name COPE_HUMAN
Primary accession number O14579
Secondary accession number O76097
Entered in Swiss-Prot in Release 39, May 2000
Sequence was last modified in Release 39, May 2000
Annotations were last modified in    Release 41, February 2003
Name and origin of the protein
Protein name Coatomer epsilon subunit
Synonyms Epsilon-coat protein
Epsilon-COP
Gene name
COPE
From
Homo sapiens (Human) [TaxID: 9606]
Taxonomy Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
References
[1]
SEQUENCE FROM NUCLEIC ACID.
Baehr C., Herzog A., Haeussermann S., Marks F., Gschwendt M.;
"Cloning, expression, and phosphorylation by protein kinase A of human epsilon-COP.";
Submitted (SEP-1999) to the EMBL/GenBank/DDBJ databases.
[2]
SEQUENCE FROM NUCLEIC ACID.
Lamerdin J.E., McCready P.M., Skowronski E., Adamson A.W., Burkhart-Schultz K., Gordon L., Kyle A., Ramirez M., Stilwagen S., Phan H., Velasco N., Do L., Regala W., Terry A., Garnes J., Danganan L., Poundstone P., Christensen M., Georgescu A., Avila J., Liu S., Attix C., Andreise T., Trankheim M., Amico-Keller G., Coefield J., Duarte S., Lucas S., Bruce R., Thomas P., Quan G., Kronmiller B., Arellano A., Montgomery M., Ow D., Nolan M., Trong S., Kobayashi A., Olsen A.S., Carrano A.V.;
Submitted (JUN-1998) to the EMBL/GenBank/DDBJ databases.
[3]
SEQUENCE FROM NUCLEIC ACID.
TISSUE=Uterus;
MEDLINE=21154917; PubMed=11230166; [NCBI, ExPASy, EBI, Israel, Japan]
Wiemann S., Weil B., Wellenreuther R., Gassenhuber J., Glassl S., Ansorge W., Boecher M., Bloecker H., Bauersachs S., Blum H., Lauber J., Duesterhoeft A., Beyer A., Koehrer K., Strack N., Mewes H.-W., Ottenwaelder B., Obermaier B., Tampe J., Heubner D., Wambutt R., Korn B., Klein M., Poustka A.;
"Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs.";
Genome Res. 11:422-435(2001).
[4]
SEQUENCE FROM NUCLEIC ACID.
TISSUE=Brain, Lymph, and Skin;
Strausberg R.;
Submitted (NOV-2001) to the EMBL/GenBank/DDBJ databases.
Comments
  • FUNCTION: THE COATOMER IS A CYTOSOLIC PROTEIN COMPLEX THAT BINDS TO DILYSINE MOTIFS AND REVERSIBLY ASSOCIATES WITH GOLGI NON-CLATHRIN-COATED VESICLES, WHICH FURTHER MEDIATE BIOSYNTHETIC PROTEIN TRANSPORT FROM THE ER, VIA THE GOLGI UP TO THE TRANS GOLGI NETWORK. COATOMER COMPLEX IS REQUIRED FOR BUDDING FROM GOLGI MEMBRANES, AND IS ESSENTIAL FOR THE RETROGRADE GOLGI-TO-ER TRANSPORT OF DILYSINE-TAGGED PROTEINS. IN MAMMALS, THE COATOMER CAN ONLY BE RECRUITED BY MEMBRANES ASSOCIATED TO ADP-RIBOSYLATION FACTORS (ARFS), WHICH ARE SMALL GTP-BINDING PROTEINS; THE COMPLEX ALSO INFLUENCES THE GOLGI STRUCTURAL INTEGRITY, AS WELL AS THE PROCESSING, ACTIVITY, AND ENDOCYTIC RECYCLING OF LDL RECEPTORS (BY SIMILARITY).
  • SUBUNIT: OLIGOMERIC COMPLEX THAT CONSISTS OF AT LEAST THE ALPHA, BETA, BETA', GAMMA, DELTA, EPSILON AND ZETA SUBUNITS.
  • SUBCELLULAR LOCATION: THE COATOMER IS CYTOPLASMIC OR POLYMERIZED ON THE CYTOPLASMIC SIDE OF THE GOLGI, AS WELL AS ON THE VESICLES/BUDS ORIGINATING FROM IT (BY SIMILARITY).
  • PTM: Phosphorylated by PKA.
  • SIMILARITY: BELONGS TO THE COPE FAMILY.
Copyright
This SWISS-PROT entry is copyright. It is produced through a collaboration between the Swiss Institute of Bioinformatics and the EMBL outstation - the European Bioinformatics Institute. There are no restrictions on its use by non-profit institutions as long as its content is in no way modified and this statement is not removed. Usage by and for commercial entities requires a license agreement (See http://www.isb-sib.ch/announce/ or send an email to license@isb-sib.ch).
Cross-references
EMBL
AJ249366; CAB55628.1; -.[EMBL / GenBank / DDBJ] [CoDingSequence]
AC002985; AAB81543.1; -.[EMBL / GenBank / DDBJ] [CoDingSequence]
AC005197; AAC24612.1; -.[EMBL / GenBank / DDBJ] [CoDingSequence]
AL136928; CAB66862.1; -.[EMBL / GenBank / DDBJ] [CoDingSequence]
BC003155; AAH03155.1; -.[EMBL / GenBank / DDBJ] [CoDingSequence]
BC007250; AAH07250.1; -.[EMBL / GenBank / DDBJ] [CoDingSequence]
BC017285; AAH17285.1; -.[EMBL / GenBank / DDBJ] [CoDingSequence]
Genew HGNC:2234; COPE.
CleanEx HGNC:2234; COPE.
MIM 606942 [NCBI / EBI].
GeneCards COPE.
GeneLynx COPE; Homo sapiens.
SOURCE COPE; Homo sapiens.
Ensembl O14579; Homo sapiens. [Entry / Contig view]
InterPro IPR006822; Coatomer_E.
Graphical view of domain structure.
Pfam PF04733; Coatomer_E; 1.
ProDom [Domain structure / List of seq. sharing at least 1 domain].
BLOCKS O14579.
ProtoNet O14579.
ProtoMap O14579.
PRESAGE O14579.
DIP O14579.
ModBase O14579.
SWISS-2DPAGE Get region on 2D PAGE.
Keywords
Transport; Protein transport; Golgi stack; Membrane; Phosphorylation.
Features
KeyFrom To Length Description
INIT_MET   0   0        BY SIMILARITY.
SEVIEWER logo Feature table viewer
Sequence information
Length: 307 AA Molecular weight: 34350 Da CRC64: 25E16D370869AF3B [This is a checksum on the sequence]
        10         20         30         40         50         60 
         |          |          |          |          |          | 
APPAPGPASG GSGEVDELFD VKNAFYIGSY QQCINEAQRV KLSSPERDVE RDVFLYRAYL 

        70         80         90        100        110        120 
         |          |          |          |          |          | 
AQRKFGVVLD EIKPSSAPEL QAVRMFADYL AHESRRDSIV AELDREMSRS VDVTNTTFLL 

       130        140        150        160        170        180 
         |          |          |          |          |          | 
MAASIYLHDQ NPDAALRALH QGDSLECTAM TVQILLKLDR LDLARKELKR MQDLDEDATL 

       190        200        210        220        230        240 
         |          |          |          |          |          | 
TQLATAWVSL ATGGEKLQDA YYIFQEMADK CSPTLLLLNG QAACHMAQGR WEAAEGLLQE 

       250        260        270        280        290        300 
         |          |          |          |          |          | 
ALDKDSGYPE TLVNLIVLSQ HLGKPPEVTN RYLSQLKDAH RSHPFIKEYQ AKENDFDRLV 



LQYAPSA 

O14579 in FASTA format

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