MS-Fit Search Results



.

Parameters

Database searched: SwissProt.8.17.2002
Digest Used: Trypsin
Max. # Missed Cleavages: 1
Peptide N terminus: Hydrogen
Peptide C terminus: Free Acid
Cysteine Modification: acrylamide
Instrument Name: MALDI-TOF
Sample ID (comment): B68-26
Minimum Matches: 4
Sort Type: Score Sort
Considered modifications: | Peptide N-terminal Gln to pyroGlu | Oxidation of M | Protein N-terminus Acetylated |
Min Parent Ion Matches: 1
MOWSE On: 1
MOWSE P Factor: 0.4

Pre Search Results

Number of entries in the database: 113193
Molecular weight search (1000 - 100000 Da) selects 106912 entries.
Full pI range: 113193 entries.
Species search ( HUMAN MOUSE ) selects 13762 entries.
Combined molecular weight, pI and species searches select 12196 entries.
Pre searches select 12196 entries.

Data Set 1 Results

MS-Fit search selects 4160 entries (results displayed for top 10 matches).

Results Summary

MOWSE
Score
#/121(%)
Masses
Matched
%
Cov
%
TIC
Mean
Err
ppm
Data
Tol
ppm
MS-Digest Index #Protein MW (Da)/pIAccession #SpeciesProtein Name
12.537e+00815 (12)32.012.470.158.9 47656/4.7HUMANChromatin assembly factor 1 subunit C (CAF-1 subunit C) (Chromatin assembly factor I p48 subunit) (CAF-I 48 kDa subunit) (CAF-Ip48) (Retinoblastoma binding protein p48) (Retinoblastoma-binding protein 4) (RBBP-4) (MSI1 protein homolog)
21.173e+00815 (12)31.012.471.958.7 51771/4.9MOUSEChromatin assembly factor 1 subunit C (CAF-1 subunit C) (Chromatin assembly factor I p48 subunit) (CAF-I 48 kDa subunit) (CAF-Ip48) (Retinoblastoma binding protein p48) (Retinoblastoma-binding protein 4) (RBBP-4)
32.589e+00612 (9)20.09.950.075.9 69741/5.6MOUSEHEAT SHOCK-RELATED 70 KD PROTEIN 2 (HEAT SHOCK PROTEIN 70.2)
46.980e+00511 (9)22.09.167.930.8 49671/4.8MHUMANClass I beta tubulin. Tubulin beta-5 chain
56.968e+00511 (9)22.09.167.930.8 49759/4.8HUMANTubulin beta-1 chain
66.957e+00512 (9)26.09.963.638.0 49831/4.8HUMANTubulin beta-2 chain
75.433e+00512 (9)22.09.928.686.1 53925/9.6MOUSEDouble-stranded RNA-binding protein Staufen homolog
84.887e+00517 (14)19.014.034.378.4 99635/5.5HUMANRod cGMP-specific 3',5'-cyclic phosphodiesterase alpha-subunit (GMP-PDE alpha) (PDE V-B1)
93.967e+00512 (9)20.09.943.068.0 70022/5.6HUMANHeat shock-related 70 kDa protein 2 (Heat shock 70 kDa protein 2)
103.353e+00518 (14)29.014.935.870.2 69346/5.8MOUSEEzrin (p81) (Cytovillin) (Villin 2)
65943....x......x..x......x..............x.....xx.............x..........x....x.xx...........x................x.............x.
70103....x......x..x......x..............x.....xx.............x..........x....x.xx...........x................x.............x.
14926..................................x...x..............x........x..x........x.x.x..........x..x....................x.....x.
43754................................xx...x............x..x..x..x..x..........................x..x..................x.........
27059................................xx...x............x..x..x..x..x..........................x..x..................x.........
22033................................xx...x............x..x..x..x........x....................x..x....x.............x.........
71233..........x..x...................................x...x..x...............xx.xx...x.........x...........................x..
86142...x.....x..............x...............x.xx.x..x.......xxxx.......x..x......................x.............x.x...........
79083..................................x...x..............x...........xx.......x.x.x..........................x.x.....x.....x.
108545...xx.x...x..x.x.x...x.x...x...................x...............................x.........x.x..x.........x......xx........



Detailed Results

1. 15/121 matches (12%).
Acc. #: Species: HUMAN Name: Chromatin assembly factor 1 subunit C (CAF-1 subunit C) (Chromatin assembly factor I p48 subunit) (CAF-I 48 kDa subunit) (CAF-Ip48) (Retinoblastoma binding protein p48) (Retinoblastoma-binding protein 4) (RBBP-4) (MSI1 protein homolog)
Index: MW: 47656 Da pI: 4.7
m/z
Submitted
MH+
Matched
Delta
ppm
ModificationsStartEndMissed
Cleavages
Database
Sequence
894.5366894.45738916220(R) (I)
934.5595934.4820832522580(K) (S)
950.5497950.4770771Met-ox 2522580(K)LMIWDTR(S)
973.6276973.5471832973040(K) (N)
1067.61611067.5234871211290(K) (A)
1128.62501128.5326821031140(K) (I)
1130.71391130.6322723413491(R) (I)
1251.65781251.5493875150(K) (V)
1328.72661328.7690-322973071(K) (L)
1449.82761449.7234721321430(R) (T)
1465.82761465.7183751Met-ox 1321430(R)YMPQNPCIIATK(T)
1471.84481471.7321771441560(K) (H)
1607.83541607.718972AcetN 1151(-)ADKEAAFDDAVEER(V)
1819.97471819.8397741571720(K) (L)
2873.51702873.3594553503760(K) (I)

Click link below to search for cysteine linked fragments.

Click link below to do a non-specific cleavage search.

Click link below to search for another component.

The matched peptides cover 32% (138/425AA's) of the protein.
Coverage Map for This Hit (MS-Digest index #):

2. 15/121 matches (12%).
Acc. #: Species: MOUSE Name: Chromatin assembly factor 1 subunit C (CAF-1 subunit C) (Chromatin assembly factor I p48 subunit) (CAF-I 48 kDa subunit) (CAF-Ip48) (Retinoblastoma binding protein p48) (Retinoblastoma-binding protein 4) (RBBP-4)
Index: MW: 51771 Da pI: 4.9
m/z
Submitted
MH+
Matched
Delta
ppm
ModificationsStartEndMissed
Cleavages
Database
Sequence
894.5366894.45738916220(R) (I)
934.5595934.4668994544610(R) (-)
934.5595934.4820832522580(K) (S)
950.5497950.4770771Met-ox 2522580(K)LMIWDTR(S)
973.6276973.5471832973040(K) (N)
1067.61611067.5234871211290(K) (A)
1128.62501128.5326821031140(K) (I)
1130.71391130.6322723413491(R) (I)
1251.65781251.5493875150(K) (V)
1328.72661328.7690-322973071(K) (L)
1449.82761449.7234721321430(R) (T)
1465.82761465.7183751Met-ox 1321430(R)YMPQNPCIIATK(T)
1471.84481471.7321771441560(K) (H)
1607.83541607.718972AcetN 1151(-)ADKEAAFDDAVEER(V)
1819.97471819.8397741571720(K) (L)
2873.51702873.3594553503760(K) (I)

Click link below to search for cysteine linked fragments.

Click link below to do a non-specific cleavage search.

Click link below to search for another component.

The matched peptides cover 31% (146/461AA's) of the protein.
Coverage Map for This Hit (MS-Digest index #):

3. 12/121 matches (9%).
Acc. #: Species: MOUSE Name: HEAT SHOCK-RELATED 70 KD PROTEIN 2 (HEAT SHOCK PROTEIN 70.2)
Index: MW: 69741 Da pI: 5.6
m/z
Submitted
MH+
Matched
Delta
ppm
ModificationsStartEndMissed
Cleavages
Database
Sequence
1050.53821050.5472-8.61301390(K) (V)
1081.63281081.5682603523600(K) (E)
1229.70441229.6854151611720(K) (I)
1301.72751301.6378695435530(K) (Q)
1309.75391309.6826541281391(K) (V)
1450.81211450.80584.33493601(K) (E)
1471.84481471.7943346016121(K) (L)
1487.84771487.70189838500(R) (L)
1620.93481620.78049558710(K) (K)
1636.92481636.7753911Met-ox 58710(K)NQVAMNPTNTIFDR(K)
1994.07641993.92317779941(K) (V)
2873.51702873.48969.54735001(R) (E)

Click link below to search for cysteine linked fragments.

Click link below to do a non-specific cleavage search.

Click link below to search for another component.

The matched peptides cover 20% (130/633AA's) of the protein.
Coverage Map for This Hit (MS-Digest index #):

4. 11/121 matches (9%).
Acc. #: Species: HUMAN Name: Class I beta tubulin. Tubulin beta-5 chain
Acc. #: Species: CHICK Name: TUBULIN BETA-7 CHAIN (TUBULIN BETA 4')
Index: MW: 49671 Da pI: 4.8
m/z
Submitted
MH+
Matched
Delta
ppm
ModificationsStartEndMissed
Cleavages
Database
Sequence
1039.66501039.5940683103180(R) (G)
1042.63281042.5355933513590(K) (G)
1077.62111077.5329821551621(K) (I)
1159.68061159.6298441Met-ox 2532620(K)LAVNMVPFPR(L)
1229.70441229.5989863813900(R) (R)
1245.69061245.5938781Met-ox 3813900(R)ISEQFTAMFR(R)
1258.75581258.6908522422521(R) (L)
1301.72751301.63786947580(R) (Y)
1620.93481620.8361612632760(R) (G)
1636.92481636.8310571Met-ox 2632760(R)LHFFMPGFAPLTSR(G)
1959.09511958.9823581041210(K) (K)

Click link below to search for cysteine linked fragments.

Click link below to do a non-specific cleavage search.

Click link below to search for another component.

The matched peptides cover 22% (101/444AA's) of the protein.
Coverage Map for This Hit (MS-Digest index #):

5. 11/121 matches (9%).
Acc. #: Species: HUMAN Name: Tubulin beta-1 chain
Index: MW: 49759 Da pI: 4.8
m/z
Submitted
MH+
Matched
Delta
ppm
ModificationsStartEndMissed
Cleavages
Database
Sequence
1039.66501039.5940683103180(R) (G)
1042.63281042.5355933513590(K) (G)
1077.62111077.5329821551621(K) (I)
1159.68061159.6298441Met-ox 2532620(K)LAVNMVPFPR(L)
1229.70441229.5989863813900(R) (R)
1245.69061245.5938781Met-ox 3813900(R)ISEQFTAMFR(R)
1258.75581258.6908522422521(R) (L)
1301.72751301.63786947580(R) (Y)
1620.93481620.8361612632760(R) (G)
1636.92481636.8310571Met-ox 2632760(R)LHFFMPGFAPLTSR(G)
1959.09511958.9823581041210(K) (K)

Click link below to search for cysteine linked fragments.

Click link below to do a non-specific cleavage search.

Click link below to search for another component.

The matched peptides cover 22% (101/444AA's) of the protein.
Coverage Map for This Hit (MS-Digest index #):

6. 12/121 matches (9%).
Acc. #: Species: HUMAN Name: Tubulin beta-2 chain
Index: MW: 49831 Da pI: 4.8
m/z
Submitted
MH+
Matched
Delta
ppm
ModificationsStartEndMissed
Cleavages
Database
Sequence
1039.66501039.5940683103180(R) (G)
1042.63281042.5355933513590(K) (G)
1077.62111077.5329821551621(K) (I)
1159.68061159.6298441Met-ox 2532620(K)LAVNMVPFPR(L)
1229.70441229.5989863813900(R) (R)
1245.69061245.5938781Met-ox 3813900(R)ISEQFTAMFR(R)
1258.75581258.6908522422521(R) (L)
1328.72661328.64875947580(R) (Y)
1620.93481620.8361612632760(R) (G)
1636.92481636.8310571Met-ox 2632760(R)LHFFMPGFAPLTSR(G)
1707.90741707.8627261Met-ox 2832970(R)ALTVPELTQQMFDAK(N)
1959.09511958.9823581041210(K) (K)

Click link below to search for cysteine linked fragments.

Click link below to do a non-specific cleavage search.

Click link below to search for another component.

The matched peptides cover 26% (116/445AA's) of the protein.
Coverage Map for This Hit (MS-Digest index #):

7. 12/121 matches (9%).
Acc. #: Species: MOUSE Name: Double-stranded RNA-binding protein Staufen homolog
Index: MW: 53925 Da pI: 9.6
m/z
Submitted
MH+
Matched
Delta
ppm
ModificationsStartEndMissed
Cleavages
Database
Sequence
933.5320933.5192143593670(K) (E)
949.5268949.5141131Met-ox 3593670(K)ATVTAMIAR(E)
1158.64551158.6271161091180(R) (E)
1229.70441229.6101771100(-) (M)
1245.69061245.6050691Met-ox 1100(-)MYKPVDPHSR(M)
1434.87271434.7453892352481(K) (V)
1449.82761449.7412602532650(R) (V)
1465.82761465.7361621Met-ox 2532650(R)NAAENMLEILGFK(V)
1471.84481471.9113-451641761(R) (I)
1519.84011519.8484-5.5961081(K) (N)
1621.87751621.8372251Met-ox 2522651(K)RNAAENMLEILGFK(V)
2717.21542717.2987-314624861(K) (C)

Click link below to search for cysteine linked fragments.

Click link below to do a non-specific cleavage search.

Click link below to search for another component.

The matched peptides cover 22% (108/487AA's) of the protein.
Coverage Map for This Hit (MS-Digest index #):

8. 17/121 matches (14%).
Acc. #: Species: HUMAN Name: Rod cGMP-specific 3',5'-cyclic phosphodiesterase alpha-subunit (GMP-PDE alpha) (PDE V-B1)
Index: MW: 99635 Da pI: 5.5
m/z
Submitted
MH+
Matched
Delta
ppm
ModificationsStartEndMissed
Cleavages
Database
Sequence
890.4271890.4372-111982050(K) (R)
929.6296929.56726732400(K) (E)
977.6021977.5308734484550(K) (Y)
1114.60241114.6294-243843930(K) (K)
1128.62501128.6992-6630401(R) (E)
1130.71391130.6244791Met-ox 3843930(K)NVLSMPIVNK(K)
1142.61691142.5767351Met-ox 2752840(R)YSVGLLDMTK(Q)
1156.63941156.55407422290(K) (A)
1245.69061245.674413pyroGlu 2582671(R)QFHKALYTVR(A)
1251.65781251.58575867760(R) (C)
1251.65781251.6196305455541(R) (K)
1254.68211254.6040628118211(K) (V)
1258.75581258.7193291Met-ox 3843941(K)NVLSMPIVNKK(E)
1320.72501320.6146841Met-ox 3733830(K)EPLDESGWMIK(N)
1350.79431350.7646226306401(R) (D)
1650.94321650.93326.15315441(K) (F)
1836.00181835.9478295635790(R) (L)
1852.05621851.9427611Met-ox 5635790(R)HGFNVGQTMFSLLVTGK(L)
1852.05621852.0009303123261(R) (E)

Click link below to search for cysteine linked fragments.

Click link below to do a non-specific cleavage search.

Click link below to search for another component.

The matched peptides cover 19% (165/860AA's) of the protein.
Coverage Map for This Hit (MS-Digest index #):

9. 12/121 matches (9%).
Acc. #: Species: HUMAN Name: Heat shock-related 70 kDa protein 2 (Heat shock 70 kDa protein 2)
Index: MW: 70022 Da pI: 5.6
m/z
Submitted
MH+
Matched
Delta
ppm
ModificationsStartEndMissed
Cleavages
Database
Sequence
1050.53821050.5472-8.61301390(K) (V)
1081.63281081.5682603523600(K) (E)
1229.70441229.6854151611720(K) (I)
1309.75391309.6826541281391(K) (V)
1315.76661315.6534865435530(K) (Q)
1450.81211450.80584.33493601(K) (E)
1471.84481471.7943346016121(K) (L)
1487.84771487.70189838500(R) (L)
1819.97471819.91253458731(K) (L)
1836.00181835.9074511Met-ox 58731(K)NQVAMNPTNTIFDAKR(L)
1994.07641993.92317779941(K) (V)
2873.51702873.48969.54735001(R) (E)

Click link below to search for cysteine linked fragments.

Click link below to do a non-specific cleavage search.

Click link below to search for another component.

The matched peptides cover 20% (132/639AA's) of the protein.
Coverage Map for This Hit (MS-Digest index #):

10. 18/121 matches (14%).
Acc. #: Species: MOUSE Name: Ezrin (p81) (Cytovillin) (Villin 2)
Index: MW: 69346 Da pI: 5.8
m/z
Submitted
MH+
Matched
Delta
ppm
ModificationsStartEndMissed
Cleavages
Database
Sequence
890.4271890.4583-353313371(R) (E)
894.5366894.5453-9.81011070(K) (D)
916.5394916.52161964711(K) (K)
916.5394916.52161965721(K) (E)
933.5320933.4828533363421(R) (E)
933.5320933.4828533383441(K) (E)
949.5268949.4777521Met-ox 3363421(R)EKEQMLR(E)
949.5268949.4777521Met-ox 3383441(K)EQMLREK(E)
954.5282954.5559-29180(-) (V)
956.5470956.505344pyroGlu 3213281(R)QQLEAEKK(R)
973.6276973.5318983213281(R) (R)
976.6033976.54685828350(K) (T)
989.6029989.54206272791(R) (F)
1152.67151152.5901713513591(R) (R)
1493.82281493.6919885485590(R) (Q)
1620.93481620.8433561Met-ox 1721841(R)IQVWHAEHRGMLK(D)
1629.82981629.79532141530(R) (G)
1651.83811651.8179124134270(K) (I)
1791.86761791.8708-1.82802930(R) (R)
1959.09511959.0147415305461(R) (R)
1963.00871962.9523291Met-ox 1942090(K)IAQDLEMYGINYFEIK(N)

Click link below to search for cysteine linked fragments.

Click link below to do a non-specific cleavage search.

Click link below to search for another component.

The matched peptides cover 29% (170/586AA's) of the protein.
Coverage Map for This Hit (MS-Digest index #):


MS-Fit in ProteinProspector 4.0.4
© Copyright (1995-2002) The Regents of the University of California.