ExPASy Home page Site Map Search ExPASy Contact us Swiss-Prot
Hosted by NCSC USMirror sites:Canada China Korea Taiwan USA
Search for

NiceProt View of Swiss-Prot: O43175

[General] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

Note: most headings are clickable, even if they don't appear as links. They link to the user manual or other documents.
General information about the entry
Entry name SERA_HUMAN
Primary accession number O43175
Secondary accession number Q9BQ01
Entered in Swiss-Prot in Release 38, July 1999
Sequence was last modified in Release 41, February 2003
Annotations were last modified in    Release 41, February 2003
Name and origin of the protein
Protein name D-3-phosphoglycerate dehydrogenase
Synonyms EC 1.1.1.95
3-PGDH
Gene name
PHGDH or PGDH3
From
Homo sapiens (Human) [TaxID: 9606]
Taxonomy Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
References
[1]
SEQUENCE FROM NUCLEIC ACID.
MEDLINE=20179699; PubMed=10713460; [NCBI, ExPASy, EBI, Israel, Japan]
Cho H.M., Jun D.Y., Bae M.A., Ahn J.D., Kim Y.H.;
"Nucleotide sequence and differential expression of the human 3-phosphoglycerate dehydrogenase gene.";
Gene 245:193-201(2000).
[2]
SEQUENCE FROM NUCLEIC ACID, AND VARIANTS PHGDH DEFICIENCY MET-425 AND MET-490.
MEDLINE=20530221; PubMed=11055895; [NCBI, ExPASy, EBI, Israel, Japan]
Klomp L.W.J., de Koning T.J., Malingre H.E.M., van Beurden E.A.C.M., Brink M., Opdam F.L., Duran M., Jaeken J., Pineda M., van Maldergem L., Poll-The B.T., van den Berg I.E.T., Berger R.;
"Molecular characterization of 3-phosphoglycerate dehydrogenase deficiency -- a neurometabolic disorder associated with reduced L-serine biosynthesis.";
Am. J. Hum. Genet. 67:1389-1399(2000).
[3]
SEQUENCE FROM NUCLEIC ACID.
TISSUE=Brain, Lung, and Muscle;
Strausberg R.;
Submitted (JUL-2001) to the EMBL/GenBank/DDBJ databases.
Comments
  • CATALYTIC ACTIVITY: 3-phosphoglycerate + NAD+ = 3-phosphohydroxypyruvate + NADH.
  • PATHWAY: Serine biosynthesis; first step.
  • SUBUNIT: Homotetramer (By similarity).
  • DISEASE: Defects in PHGDH are the cause of a deficiency characterized by congenital microcephaly, psychomotor retardation, and seizures.
  • SIMILARITY: BELONGS TO THE D-ISOMER SPECIFIC 2-HYDROXYACID DEHYDROGENASES FAMILY.
Copyright
This SWISS-PROT entry is copyright. It is produced through a collaboration between the Swiss Institute of Bioinformatics and the EMBL outstation - the European Bioinformatics Institute. There are no restrictions on its use by non-profit institutions as long as its content is in no way modified and this statement is not removed. Usage by and for commercial entities requires a license agreement (See http://www.isb-sib.ch/announce/ or send an email to license@isb-sib.ch).
Cross-references
EMBL
AF006043; AAB88664.1; -.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF171237; AAD51415.1; -.[EMBL / GenBank / DDBJ] [CoDingSequence]
BC000303; AAH00303.1; -.[EMBL / GenBank / DDBJ] [CoDingSequence]
BC001349; AAH01349.1; -.[EMBL / GenBank / DDBJ] [CoDingSequence]
BC011262; AAH11262.1; -.[EMBL / GenBank / DDBJ] [CoDingSequence]
HSSP P08328; 1PSD. [HSSP ENTRY / PDB]
Genew HGNC:8923; PHGDH.
CleanEx HGNC:8923; PHGDH.
MIM 606879 [NCBI / EBI].
601815 [NCBI / EBI].
GeneCards PHGDH.
GeneLynx PHGDH; Homo sapiens.
SOURCE PHGDH; Homo sapiens.
Ensembl O43175; Homo sapiens. [Entry / Contig view]
InterPro IPR006139; 2-Hacid_DH.
IPR006140; 2-Hacid_DH_C.
IPR006236; PGDH.
Graphical view of domain structure.
Pfam PF00389; 2-Hacid_DH; 1.
PF02826; 2-Hacid_DH_C; 1.
TIGRFAMs TIGR01327; PGDH; 1.
PROSITE PS00065; D_2_HYDROXYACID_DH_1; 1.
PS00670; D_2_HYDROXYACID_DH_2; 1.
PS00671; D_2_HYDROXYACID_DH_3; 1.
ProDom [Domain structure / List of seq. sharing at least 1 domain].
BLOCKS O43175.
ProtoNet O43175.
ProtoMap O43175.
PRESAGE O43175.
DIP O43175.
ModBase O43175.
SWISS-2DPAGE Get region on 2D PAGE.
Keywords
Serine biosynthesis; Oxidoreductase; NAD; Disease mutation.
Features
KeyFrom   To Length Description
ACT_SITE   236   236        SUBSTRATE BINDING (BY SIMILARITY).
ACT_SITE   265   265        BY SIMILARITY.
ACT_SITE   283   283        BY SIMILARITY.
VARIANT   425   425        V -> M (IN PHGDH DEFICIENCY).
/FTId=VAR_013461.
VARIANT   490   490        V -> M (IN PHGDH DEFICIENCY).
/FTId=VAR_013462.
CONFLICT   25    25        D -> E (IN REF. 1).
SEVIEWER logo Feature table viewer
Sequence information
Length: 533 AA Molecular weight: 56650 Da CRC64: C58EB72275C45B35 [This is a checksum on the sequence]
        10         20         30         40         50         60 
         |          |          |          |          |          | 
MAFANLRKVL ISDSLDPCCR KILQDGGLQV VEKQNLSKEE LIAELQDCEG LIVRSATKVT 

        70         80         90        100        110        120 
         |          |          |          |          |          | 
ADVINAAEKL QVVGRAGTGV DNVDLEAATR KGILVMNTPN GNSLSAAELT CGMIMCLARQ 

       130        140        150        160        170        180 
         |          |          |          |          |          | 
IPQATASMKD GKWERKKFMG TELNGKTLGI LGLGRIGREV ATRMQSFGMK TIGYDPIISP 

       190        200        210        220        230        240 
         |          |          |          |          |          | 
EVSASFGVQQ LPLEEIWPLC DFITVHTPLL PSTTGLLNDN TFAQCKKGVR VVNCARGGIV 

       250        260        270        280        290        300 
         |          |          |          |          |          | 
DEGALLRALQ SGQCAGAALD VFTEEPPRDR ALVDHENVIS CPHLGASTKE AQSRCGEEIA 

       310        320        330        340        350        360 
         |          |          |          |          |          | 
VQFVDMVKGK SLTGVVNAQA LTSAFSPHTK PWIGLAEALG TLMRAWAGSP KGTIQVITQG 

       370        380        390        400        410        420 
         |          |          |          |          |          | 
TSLKNAGNCL SPAVIVGLLK EASKQADVNL VNAKLLVKEA GLNVTTSHSP AAPGEQGFGE 

       430        440        450        460        470        480 
         |          |          |          |          |          | 
CLLAVALAGA PYQAVGLVQG TTPVLQGLNG AVFRPEVPLR RDLPLLLFRT QTSDPAMLPT 

       490        500        510        520        530 
         |          |          |          |          | 
MIGLLAEAGV RLLSYQTSLV SDGETWHVMG ISSLLPSLEA WKQHVTEAFQ FHF 

O43175 in FASTA format

View entry in original Swiss-Prot format
View entry in raw text format (no links)
Report form for errors/updates in this Swiss-Prot entry

BLAST logo BLAST submission on ExPASy/SIB
or at NCBI (USA)
Tools Sequence analysis tools: ProtParam, ProtScale, Compute pI/Mw, PeptideMass, PeptideCutter, Dotlet (Java)
PROSITE logo ScanProsite, MotifScan SWISS-MODEL Search the SWISS-MODEL Repository
ExPASy Home page Site Map Search ExPASy Contact us Swiss-Prot
Hosted by NCSC USMirror sites:Canada China Korea Taiwan USA